Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 479087

Identification

Species:
Arabidopsis lyrata
Gene model
479087
Description
fgenesh2_kg.3__1788__AT3G16350.1
Family
MYB-related
3D structure (top 5)
1IRZ 2ELK 2CU7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G16350.1 Score: 1

Carica papaya

evm.TU.supercontig_2092.1 Score: 1

Populus trichocarpa

645998 Score: 1

Vitis vinifera

GSVIVP00034313001 Score: 1

Expression data

Expressed Sequence Tags

At.47678
Arabidopsis thaliana myb family transcription factor (AT3G16350) mRNA, complete cds /cds=p(111,1274) /gb=NM_112506
Mtr.14074
EST1226559 MTY Medicago truncatula cDNA clone MTYAV63, mRNA sequence /clone=MTYAV63 /gb=DW017598
Mtr.3679
EST1224491 MTY Medicago truncatula cDNA clone MTYA640, mRNA sequence /clone=MTYA640 /gb=DW015530
Pth.10577
Populus trichocarpa clone WS01230_F05 unknown mRNA /cds=p(116,1054) /gb=EF147391

Domain Architecture

Myb_DNA-binding PF00249 479087
DomainStartEndBit scoreE-value
Myb_DNA-binding13117848.33e-11

Sequences