Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 479452

Identification

Species:
Arabidopsis lyrata
Gene model
479452
Description
fgenesh2_kg.3__2153__AT3G19360.1
Family
C3H
3D structure (top 5)
1M9O 2D9M 2E5S 3D2N 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G19360.1 Score: 1

Carica papaya

evm.TU.supercontig_75.53 Score: 1

Populus trichocarpa

557115 Score: 1

Vitis vinifera

GSVIVP00016857001 Score: 1

Expression data

Expressed Sequence Tags

At.22994
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT3G19360) mRNA, complete cds /cds=p(59,1219) /gb=NM_112823
Pba.1354
WS0253.B21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_H24 3', mRNA sequence /clone=WS0253_H24 /clone_end=3' /gb=CV244018
Pth.1354
WS0253.B21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_H24 3', mRNA sequence /clone=WS0253_H24 /clone_end=3' /gb=CV244018

Domain Architecture

zf-CCCH PF00642 479452
DomainStartEndBit scoreE-value
zf-CCCH10713234.35e-07
zf-CCCH18721323.20.0011
zf-CCCH27329949.91e-11

Sequences