Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 480130

Identification

Species:
Arabidopsis lyrata
Gene model
480130
Description
fgenesh2_kg.3__2831__AT2G05160.1
Family
C3H
3D structure (top 5)
2E5G
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G05160.1 Score: 1

Carica papaya

evm.TU.supercontig_211.13 Score: 1

Arabidopsis lyrata

480130 Score: 1
485672 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.919
LOC_Os08g03310.4 Score: 0.919
LOC_Os08g03310.5 Score: 0.911

Populus trichocarpa

732453 Score: 1

Vitis vinifera

GSVIVP00029141001 Score: 1

Expression data

Expressed Sequence Tags

At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
At.53909
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G52980) mRNA, complete cds /cds=p(1,1146) /gb=NM_115158

Domain Architecture

zf-CCCH PF00642 480130
DomainStartEndBit scoreE-value
zf-CCCH15718223.80.0007

Sequences