Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4803992

Identification

Species:
Sorghum bicolor
Gene model
4803992
Description
e_gw1.3.15409.1
Family
C2H2
3D structure (top 5)
2JP9 1A1H 2EE8 2CSH 1X6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_216.25 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g45054.2 Score: 1
LOC_Os02g45054.3 Score: 1
LOC_Os02g45054.4 Score: 1

Populus trichocarpa

671662 Score: 1

Selaginella moellendorffii

93509 Score: 1

Vitis vinifera

GSVIVP00014644001 Score: 1

Expression data

Expressed Sequence Tags

At.13356
Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds /cds=p(67,1875) /gb=AY056174
At.13357
Arabidopsis thaliana ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4) (ATIDD4) mRNA, complete cds /cds=p(360,1679) /gb=NM_001124782
At.22283
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT3G45260) mRNA, complete cds /cds=p(149,1489) /gb=NM_114395
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Mtr.13451
EST529264 GPOD Medicago truncatula cDNA clone pGPOD-1G17 5' end, mRNA sequence /clone=pGPOD-1G17 /clone_end=5' /gb=BI307854
Os.34720
Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence /cds=p(231,1661) /gb=AK070390
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.52565
Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence /gb=AK120723
Os.54518
Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence /gb=AK289209
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.6995
WS02535.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_I09 3', mRNA sequence /clone=WS02535_I09 /clone_end=3' /gb=DT488104
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 4803992
DomainStartEndBit scoreE-value
zf-C2H2163828.23.3e-05
zf-C2H29411618.30.033

Sequences