Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4805882

Identification

Species:
Sorghum bicolor
Gene model
4805882
Description
e_gw1.3.20902.1
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1NLW 2QL2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os01g70310.1 Score: 1
LOC_Os01g70310.2 Score: 1

Physcomitrella patens

118546 Score: 1

Sorghum bicolor

4805882 Score: 1
4814144 Score: 1

Selaginella moellendorffii

91237 Score: 1
94010 Score: 1

Expression data

Expressed Sequence Tags

At.25302
Arabidopsis thaliana ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription factor (ICE1) mRNA, complete cds /cds=p(298,1782) /gb=NM_113586
At.42057
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein / F-box family protein (AT1G12860) mRNA, complete cds /cds=p(1,2487) /gb=NM_101157
Hv.11662
Hordeum vulgare subsp. vulgare inducer of CBF expression 2 (ICE2) mRNA, partial cds /cds=p(1,748) /gb=DQ151536
Hv.17250
RUS24D07w HA Hordeum vulgare subsp. vulgare cDNA clone HA28H22, mRNA sequence /clone=HA28H22 /gb=FD521200
Os.13595
Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence /cds=p(50,1195) /gb=AK102594
Os.56356
Oryza sativa (japonica cultivar-group) Os11g0523700 (Os11g0523700) mRNA, partial cds /cds=p(629,1633) /gb=NM_001074519
Pba.3462
WS02546.C21.1_C11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_C11 3', mRNA sequence /clone=WS02546_C11 /clone_end=3' /gb=DT490857
Ppa.23575
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_161207) mRNA, complete cds /cds=p(1,1545) /gb=XM_001758014
Ppa.7446
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_209063) mRNA, complete cds /cds=p(24,1388) /gb=XM_001761787
Pth.12802
WS02546.C21.1_C11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_C11 3', mRNA sequence /clone=WS02546_C11 /clone_end=3' /gb=DT490857
Pth.16176
Populus trichocarpa inducer of CBF expression 1 (ICE1) mRNA, complete cds /cds=p(125,1801) /gb=EF405966
Vvi.1971
WIN1126.C21_O11 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1126_O11 3', mRNA sequence /clone=WIN1126_O11 /clone_end=3' /gb=EC986158
Vvi.21033
WIN1118.C21_H14 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1118_H14 3', mRNA sequence /clone=WIN1118_H14 /clone_end=3' /gb=EC983291

Domain Architecture

HLH PF00010 4805882
DomainStartEndBit scoreE-value
HLH35036.98.1e-08

Sequences