Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 480687

Identification

Species:
Arabidopsis lyrata
Gene model
480687
Description
fgenesh2_kg.3__3388__AT2G17870.1
Family
CSD
3D structure (top 5)
1MJC 1H95 3CAM 1C9O 2K5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G17870.1 Score: 1

Arabidopsis lyrata

480687 Score: 1
491032 Score: 1

Carica papaya

evm.TU.supercontig_6.256 Score: 1

Expression data

Expressed Sequence Tags

At.19464
Arabidopsis thaliana cold-shock DNA-binding family protein (AT2G17870) mRNA, complete cds /cds=p(50,955) /gb=NM_127341
At.23073
Arabidopsis thaliana mRNA for glycine-rich protein, complete cds, clone: RAFL07-95-D17 /cds=p(60,959) /gb=AK226815

Domain Architecture

CSD PF00313 480687
DomainStartEndBit scoreE-value
CSD875117.93.3e-32
zf-CCHC9210932.41.8e-06
zf-CCHC12814534.44.6e-07
zf-CCHC15817530.54.4e-06
zf-CCHC192209331.2e-06
zf-CCHC22324030.15.3e-06
zf-CCHC246263313.6e-06
zf-CCHC28029736.79.1e-08

Sequences