Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 481010

Identification

Species:
Arabidopsis lyrata
Gene model
481010
Description
fgenesh2_kg.4__70__AT2G21450.1
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 3DMQ 1Z5Z 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G21450.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g14440.1 Score: 1
LOC_Os06g14440.2 Score: 1
LOC_Os06g14440.3 Score: 1
LOC_Os06g14440.4 Score: 1
LOC_Os07g25390.1 Score: 0.929

Physcomitrella patens

113504 Score: 1

Populus trichocarpa

195587 Score: 1

Sorghum bicolor

4839144 Score: 1

Vitis vinifera

GSVIVP00035918001 Score: 1

Zea mays

GRMZM2G093940_P01 Score: 1

Expression data

Expressed Sequence Tags

At.39568
Arabidopsis thaliana CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase (CHR34) mRNA, complete cds /cds=p(1,2451) /gb=NM_127717
At.40283
Arabidopsis thaliana DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding (DRD1) mRNA, complete cds /cds=p(1,2667) /gb=NM_127193
Mtr.13984
NF032E03FL1F1023 Developing flower Medicago truncatula cDNA clone NF032E03FL 5', mRNA sequence /clone=NF032E03FL /clone_end=5' /gb=BQ147082
Os.61122
Oryza sativa (japonica cultivar-group) Os07g0434500 (Os07g0434500) mRNA, complete cds /cds=p(1,3672) /gb=NM_001066032
Os.86342
Oryza sativa (japonica cultivar-group) Os08g0289300 (Os08g0289300) mRNA, complete cds /cds=p(1,1299) /gb=NM_001067993
Vvi.11805
S2B20419 Buds (VvS2) Vitis vinifera cDNA clone S2B20419, mRNA sequence /clone=S2B20419 /gb=EE077407

Domain Architecture

SNF2_N PF00176 481010
DomainStartEndBit scoreE-value
SNF2_N25558423.44.6e-10
Helicase_C64672452.51.6e-12

Sequences