Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 481105

Identification

Species:
Arabidopsis lyrata
Gene model
481105
Description
fgenesh2_kg.4__165__AT2G22430.1
Family
HB
3D structure (top 5)
2R5Y 1PUF 2DMT 1ZQ3 1B72
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G22430.1 Score: 1

Carica papaya

evm.TU.supercontig_55.67 Score: 1

Populus trichocarpa

217381 Score: 1

Vitis vinifera

GSVIVP00007830001 Score: 1
GSVIVP00012167001 Score: 1

Expression data

Expressed Sequence Tags

At.20863
Arabidopsis thaliana ATHB-16/ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); transcription activator/ transcription factor (ATHB-16/ATHB16) mRNA, complete cds /cds=p(311,1195) /gb=NM_120171
At.25257
Arabidopsis thaliana ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6); transcription factor (ATHB6) mRNA, complete cds /cds=p(219,1154) /gb=NM_127808
Mtr.17800
Medicago truncatula clone MTYF9_FA_FB_FC1G-H-4 unknown mRNA /cds=m(1,800) /gb=BT051961
Os.2364
Oryza sativa Japonica Group cDNA clone:001-127-B05, full insert sequence /gb=AK105484
Pba.9592
WS02549.C21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O11 3', mRNA sequence /clone=WS02549_O11 /clone_end=3' /gb=DT492190
Pth.12047
M112B12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M112B12 5', mRNA sequence /clone=M112B12 /clone_end=5' /gb=DN494600
Pth.9592
Populus trichocarpa clone WS0126_C14 unknown mRNA /cds=p(603,1589) /gb=EF147945
Vvi.14123
CAB20001_IIa_Fa_G03 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20001_IIa_Fa_G03 5', mRNA sequence /clone=CAB20001_IIa_Fa_G03 /clone_end=5' /gb=CF207267

Domain Architecture

Homeobox PF00046 481105
DomainStartEndBit scoreE-value
Homeobox6111571.92.3e-18
HALZ11616067.84e-17

Sequences