Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 481142

Identification

Species:
Arabidopsis lyrata
Gene model
481142
Description
fgenesh2_kg.4__202__AT2G22800.1
Family
HB
3D structure (top 5)
2R5Y 1E3O 2DA6 1PUF 2DMT
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G22800.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g12860.1 Score: 1

Expression data

Expressed Sequence Tags

At.12844
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS72ZB04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX820085
At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
At.23912
Arabidopsis thaliana At4g37790 mRNA sequence /gb=AY045894
At.24419
Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds /cds=p(202,1056) /gb=M90394
Mtr.1441
Medicago truncatula clone MTYFD_FE_FF_FG1G-H-17 unknown mRNA /cds=p(54,866) /gb=BT052694
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Mtr.9149
EST668865 MTUS Medicago truncatula cDNA clone MTUS-4D6, mRNA sequence /clone=MTUS-4D6 /gb=CF068144
Os.23861
Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence /cds=p(140,883) /gb=AK122006
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

Homeobox PF00046 481142
DomainStartEndBit scoreE-value
Homeobox11316761.53.1e-15
HALZ16821377.16.2e-20

Sequences