Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 481629

Identification

Species:
Arabidopsis lyrata
Gene model
481629
Description
fgenesh2_kg.4__689__AT2G27300.1
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G27300.1 Score: 1

Carica papaya

evm.TU.supercontig_195.31 Score: 1

Populus trichocarpa

199890 Score: 1

Vitis vinifera

GSVIVP00037297001 Score: 1

Expression data

Expressed Sequence Tags

At.36167
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX823820
At.40004
Arabidopsis thaliana ANAC014 (ANAC014) mRNA, complete cds /cds=p(29,1987) /gb=NM_202225
At.41017
Arabidopsis thaliana ANAC045 (Arabidopsis NAC domain containing protein 45); transcription factor (ANAC045) mRNA, complete cds /cds=p(1,1440) /gb=NM_111190
At.52935
Arabidopsis thaliana ANAC040/NTL8 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 40); transcription factor (ANAC040/NTL8) mRNA, complete cds /cds=p(1,1008) /gb=NM_128289
At.65025
Arabidopsis thaliana TIP mRNA, complete cds /cds=p(198,1553) /gb=AF281062
At.7356
Arabidopsis thaliana ANAC089 (Arabidopsis NAC domain containing protein 89); transcription factor (ANAC089) mRNA, complete cds /cds=p(147,1169) /gb=NM_122134
Hv.23644
Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds /cds=p(11,1306) /gb=AB362161
Hv.5295
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf28m08, mRNA sequence /gb=AK249396
Os.4387
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence /gb=CT830886
Os.83155
Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds /cds=p(1,1953) /gb=AB265821
Os.9354
Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence /cds=p(84,2054) /gb=AK120773
Pth.11862
F111P59.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F111P59 3', mRNA sequence /clone=F111P59 /clone_end=3' /gb=CK091605

Domain Architecture

NAM PF02365 481629
DomainStartEndBit scoreE-value
NAM14141228.71.5e-65

Sequences