Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 483978

Identification

Species:
Arabidopsis lyrata
Gene model
483978
Description
fgenesh2_kg.4__3038__AT2G47890.1
Family
C2C2-CO-like

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G47890.1 Score: 1

Carica papaya

evm.TU.supercontig_9.170 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g22770.1 Score: 1

Ostreococcus tauri

23893 Score: 1

Arabidopsis lyrata

483978 Score: 1
489353 Score: 1

Populus trichocarpa

243653 Score: 1

Sorghum bicolor

5052209 Score: 1

Vitis vinifera

GSVIVP00023587001 Score: 1

Expression data

Expressed Sequence Tags

At.12948
Arabidopsis thaliana zinc finger (B-box type) family protein (AT2G47890) mRNA, complete cds /cds=p(250,963) /gb=NM_201983
Mtr.7108
METAG80TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475480

Domain Architecture

zf-B_box PF00643 483978
DomainStartEndBit scoreE-value
zf-B_box95639.91e-08
CCT27932379.61.1e-20

Sequences

protein sequence
transcript sequence