Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 485352

Identification

Species:
Arabidopsis lyrata
Gene model
485352
Description
fgenesh2_kg.5__1344__AT3G49930.1
Family
C2H2
3D structure (top 5)
1X6H 2DLQ 2DMD 1UBD 2DMI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G49930.1 Score: 1

Arabidopsis lyrata

485352 Score: 1
496850 Score: 1

Carica papaya

evm.TU.supercontig_6.32 Score: 1

Sorghum bicolor

5000738 Score: 1

Zea mays

GRMZM2G099384_P01 Score: 1

Expression data

Expressed Sequence Tags

At.35551
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT3G49930) mRNA, complete cds /cds=p(1,648) /gb=NM_114853
At.6501
Arabidopsis thaliana AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding (AZF1) mRNA, complete cds /cds=p(71,808) /gb=NM_126145
Vvi.11706
VVI155C12_607644 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI155C12 5, mRNA sequence /clone=VVI155C12 /clone_end=5' /gb=DV217991
Vvi.23739
VVL114F11_694242 CabSau Berry Postveraison Mixed Stages 36-38 (Brix > 15) under water deficit stress Vitis vinifera cDNA clone VVL114F11 5, mRNA sequence /clone=VVL114F11 /clone_end=5' /gb=DT036308

Domain Architecture

zf-C2H2 PF00096 485352
DomainStartEndBit scoreE-value
zf-C2H28410622.90.0013

Sequences