Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 485553

Identification

Species:
Arabidopsis lyrata
Gene model
485553
Description
fgenesh2_kg.5__1545__AT3G51950.1
Family
C3H
3D structure (top 5)
2E5G 3D2W 1WF0 2FY1 2JVO
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Carica papaya

evm.TU.supercontig_197.21 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g48410.1 Score: 1
LOC_Os07g48410.2 Score: 1

Populus trichocarpa

675178 Score: 1

Sorghum bicolor

5062368 Score: 1

Selaginella moellendorffii

439924 Score: 1

Zea mays

GRMZM2G003424_P02 Score: 1

Expression data

Expressed Sequence Tags

At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
At.43143
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT3G51950) mRNA, complete cds /cds=p(520,2142) /gb=NM_001035763
Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595

Domain Architecture

zf-CCCH PF00642 485553
DomainStartEndBit scoreE-value
zf-CCCH14817335.32.4e-07
RRM_125932619.90.0028

Sequences