Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 485672

Identification

Species:
Arabidopsis lyrata
Gene model
485672
Description
fgenesh2_kg.5__1664__AT3G52980.1
Family
C3H
3D structure (top 5)
2E5G 3D2W 2E5H 1WF0 2JVO
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480130 Score: 1
485672 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.919
LOC_Os08g03310.4 Score: 0.919
LOC_Os08g03310.5 Score: 0.911

Physcomitrella patens

137259 Score: 1

Zea mays

GRMZM2G148090_P02 Score: 1

Expression data

Expressed Sequence Tags

At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
At.53909
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G52980) mRNA, complete cds /cds=p(1,1146) /gb=NM_115158
Os.23145
Oryza sativa Japonica Group cDNA clone:J023082B02, full insert sequence /gb=AK111902

Domain Architecture

zf-CCCH PF00642 485672
DomainStartEndBit scoreE-value
zf-CCCH14717310.80.058

Sequences