Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 486098

Identification

Species:
Arabidopsis lyrata
Gene model
486098
Description
fgenesh2_kg.5__2090__AT3G56570.1
Family
SET
3D structure (top 5)
2H21 1N3J
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G56570.1 Score: 1

Chlorella sp. NC64A

134525 Score: 1

Coccomyxa sp. C-169

16061 Score: 1

Micromonas pusilla CCMP1545

39853 Score: 1

Micromonas sp. RCC299

63398 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g65730.1 Score: 1

Populus trichocarpa

199501 Score: 1

Sorghum bicolor

4976530 Score: 1

Selaginella moellendorffii

107696 Score: 1

Vitis vinifera

GSVIVP00003639001 Score: 1

Zea mays

GRMZM2G092759_P04 Score: 1

Chlamydomonas reinhardtii

169142 Score: 1

Expression data

Expressed Sequence Tags

At.53954
Arabidopsis thaliana SET domain-containing protein (AT3G56570) mRNA, complete cds /cds=p(1,1596) /gb=NM_115515
Os.59514
Oryza sativa Japonica Group cDNA, clone: J100026F15, full insert sequence /cds=p(15,1502) /gb=AK243108

Domain Architecture

SET PF00856 486098
DomainStartEndBit scoreE-value
SET730240.28.4e-09

Sequences