Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 486462

Identification

Species:
Arabidopsis lyrata
Gene model
486462
Description
fgenesh2_kg.5__2454__AT3G59960.1
Family
SET
3D structure (top 5)
2R3A 3F9X 2RFI 1ML9 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G59960.1 Score: 1

Coccomyxa sp. C-169

28526 Score: 1

Arabidopsis lyrata

483538 Score: 1
486462 Score: 1

Micromonas pusilla CCMP1545

23211 Score: 1

Ostreococcus tauri

22195 Score: 1

Physcomitrella patens

33525 Score: 1

Expression data

Expressed Sequence Tags

At.25522
Arabidopsis thaliana ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) (ASHH3) mRNA, complete cds /cds=p(254,1345) /gb=NM_129978
At.54011
Arabidopsis thaliana ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) (ASHH4) mRNA, complete cds /cds=p(1,1059) /gb=NM_115859
Hv.2514
HVSMEg0018E08f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0018E08f, mRNA sequence /clone=HVSMEg0018E08f /gb=BG345006
Os.24146
Oryza sativa Japonica Group cDNA clone:J013095J16, full insert sequence /gb=AK067083

Domain Architecture

SET PF00856 486462
DomainStartEndBit scoreE-value
SET106236165.81.2e-46

Sequences