Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4867429

Identification

Species:
Sorghum bicolor
Gene model
4867429
Description
estExt_Genewise1Plus.C_chr_10973
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 2QL2 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

893615 Score: 1

Arabidopsis thaliana

AT1G59640.1 Score: 1

Sorghum bicolor

4867429 Score: 1
5032765 Score: 1

Carica papaya

evm.TU.supercontig_203.4 Score: 1
evm.TU.supercontig_5.294 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g58830.1 Score: 1

Populus trichocarpa

823340 Score: 1

Vitis vinifera

GSVIVP00028942001 Score: 1

Zea mays

GRMZM2G137358_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21771
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT2G18300) mRNA, complete cds /cds=p(122,1135) /gb=NM_179645
At.24534
Arabidopsis thaliana clone 112281 mRNA, complete sequence /cds=p(189,1034) /gb=AY084578
At.25403
Arabidopsis thaliana BEE2 (BR ENHANCED EXPRESSION 2); DNA binding / transcription factor (BEE2) mRNA, complete cds /cds=p(117,1031) /gb=NM_119817
At.41276
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G26260) mRNA, complete cds /cds=p(111,1283) /gb=NM_102390
At.455
Arabidopsis thaliana ZCW32 (BIGPETAL, BIGPETALUB); DNA binding / transcription factor (ZCW32) mRNA, complete cds /cds=p(172,1203) /gb=NM_179498
Mtr.8708
MEUAZ47TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE351252
Os.33544
BP184636 pNS rice panicle cDNA, germ cell generating stage Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /clone=14FPB029 /gb=BP184636
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.90461
Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence /gb=AK242645
Os.96862
Os6CPREST0283 6cm rice panicles Oryza sativa Japonica Group cDNA clone 6CPR-B1C11S, mRNA sequence /clone=6CPR-B1C11S /gb=EG714660
Ptp.2058
A023P62.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A023P62 3', mRNA sequence /clone=A023P62 /clone_end=3' /gb=CK087853
Vvi.13991
VV_PEd0008b04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV239575
Vvi.3426
VV_PEd19d09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV243087

Domain Architecture

HLH PF00010 4867429
DomainStartEndBit scoreE-value
HLH13118141.24.2e-09

Sequences