Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4868630

Identification

Species:
Sorghum bicolor
Gene model
4868630
Description
estExt_Genewise1Plus.C_chr_12763
Family
HB
3D structure (top 5)
2DMP 1NK2 1PUF 2ECB 2DMT
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

902559 Score: 1

Arabidopsis thaliana

AT2G34710.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g43930.2 Score: 1

Physcomitrella patens

116038 Score: 1

Populus trichocarpa

815792 Score: 1

Selaginella moellendorffii

270225 Score: 1

Vitis vinifera

GSVIVP00028421001 Score: 1

Expression data

Expressed Sequence Tags

At.11011
Arabidopsis thaliana ATHB-15 (INCURVATA 4) (ATHB-15) mRNA, complete cds /cds=p(718,3102) /gb=NM_001084233
At.27961
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZC10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX815318
At.31628
Arabidopsis thaliana ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor (ATHB-8) mRNA, complete cds /cds=p(387,2888) /gb=NM_119441
At.37771
Arabidopsis thaliana PHB (PHABULOSA); DNA binding / transcription factor (PHB) mRNA, complete cds /cds=p(281,2839) /gb=NM_129025
At.7238
Arabidopsis thaliana REV (REVOLUTA); DNA binding / lipid binding / transcription factor (REV) mRNA, complete cds /cds=p(712,3240) /gb=NM_125462
Os.14126
Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence /cds=p(346,2925) /gb=AK103284
Os.22665
Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence /cds=p(411,2930) /gb=AK102378
Os.32984
Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence /gb=AK102183
Os.46312
Oryza sativa Japonica Group cDNA clone:J033098N12, full insert sequence /gb=AK102603
Ppa.10855
Physcomitrella patens class III HD-Zip protein HB12 mRNA, complete cds /cds=p(8,2542) /gb=DQ657202
Ppa.11120
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_182184) mRNA, complete cds /cds=p(28,2649) /gb=XM_001762505
Ppa.163
Physcomitrella patens PpHB10 mRNA for homeobox protein PpHB10, complete cds /cds=p(394,3036) /gb=AB032182
Pth.15999
Populus trichocarpa class III HD-Zip protein 6 (HB6) mRNA, complete cds /cds=p(1,2514) /gb=AY919621
Pth.16000
Populus trichocarpa class III HD-Zip protein 5 (HB5) mRNA, complete cds /cds=p(1,2556) /gb=AY919620
Pth.16001
Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete cds /cds=p(1,2535) /gb=AY919619
Pth.16003
Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete cds /cds=p(1,2535) /gb=AY919617
Pth.17182
Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds /cds=p(1,2487) /gb=AY919623
Pth.17640
Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete cds /cds=p(1,2532) /gb=AY919618
Pth.9853
Populus trichocarpa class III HD-Zip protein 1 (HB1) mRNA, complete cds /cds=p(1,2568) /gb=AY919616
Pth.9881
Populus trichocarpa class III HD-Zip protein 7 (HB7) mRNA, complete cds /cds=p(1,2472) /gb=AY919622

Domain Architecture

Homeobox PF00046 4868630
DomainStartEndBit scoreE-value
Homeobox258364.54.1e-16
START173383231.52.1e-66
MEKHLA705852318.91.1e-92

Sequences