Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4869866

Identification

Species:
Sorghum bicolor
Gene model
4869866
Description
estExt_Genewise1Plus.C_chr_17395
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1NLW 1A0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493087 Score: 1

Arabidopsis thaliana

AT4G17880.1 Score: 1

Carica papaya

evm.TU.supercontig_71.57 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42430.1 Score: 1

Physcomitrella patens

164645 Score: 1

Populus trichocarpa

676550 Score: 1

Zea mays

GRMZM2G001930_P01 Score: 1

Expression data

Expressed Sequence Tags

At.28311
Arabidopsis thaliana putative transcription factor bHLH28 mRNA, complete cds /cds=p(1,1536) /gb=AF252636
At.28315
Arabidopsis thaliana putative transcription factor BHLH5 mRNA, complete cds /cds=p(1,1779) /gb=AF251690
At.28316
Arabidopsis thaliana mRNA for putative transcription factor BHLH4, complete cds, clone: RAFL07-57-K04 /cds=p(109,1878) /gb=AK221507
Hv.10704
HV_CEa0018G15f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018G15f, mRNA sequence /clone=HV_CEa0018G15f /gb=BF267611
Hv.19612
HVSMEb0002N19f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0002N19f, mRNA sequence /clone=HVSMEb0002N19f /gb=BF628036
Hv.30264
HVSMEa0015J05f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0015J05f, mRNA sequence /clone=HVSMEa0015J05f /gb=BF626065
Mtr.11936
EST668901 MTUS Medicago truncatula cDNA clone MTUS-4G9, mRNA sequence /clone=MTUS-4G9 /gb=CF068180
Os.46443
Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence /gb=AK288082
Pba.276
WS02521.B21_L10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_L10 3', mRNA sequence /clone=WS02521_L10 /clone_end=3' /gb=DT483118
Pth.276
Populus trichocarpa clone WS01225_C18 unknown mRNA /cds=p(74,1549) /gb=EF146939
Sbi.15724
WOUND1_76_A03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_76_A03_A002 5', mRNA sequence /clone=WOUND1_76_A03_A002 /clone_end=5' /gb=CN151596 /gi=45994861

Domain Architecture

HLH PF00010 4869866
DomainStartEndBit scoreE-value
HLH45750650.75.8e-12

Sequences