Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4870547

Identification

Species:
Sorghum bicolor
Gene model
4870547
Description
estExt_Genewise1Plus.C_chr_18688
Family
Jumonji
3D structure (top 5)
2YU1 3D8C 1VRB 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

895721 Score: 1

Arabidopsis thaliana

AT1G78280.1 Score: 1

Chlorella sp. NC64A

144771 Score: 1

Carica papaya

evm.TU.supercontig_36.160 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g27250.1 Score: 1

Physcomitrella patens

139046 Score: 1
185122 Score: 1

Selaginella moellendorffii

406902 Score: 1

Vitis vinifera

GSVIVP00015195001 Score: 1

Zea mays

GRMZM2G152877_P01 Score: 1

Expression data

Expressed Sequence Tags

At.48390
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT1G78280) mRNA, complete cds /cds=p(269,3019) /gb=NM_106477
Hv.18772
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf104j02, mRNA sequence /gb=AK251035
Hv.26788
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf133n11, mRNA sequence /gb=AK251910
Os.45975
Oryza sativa Japonica Group cDNA clone:J023030P07, full insert sequence /gb=AK069828
Vvi.18885
WIN0213.TB24_O10 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0213_O10 3', mRNA sequence /clone=WIN0213_O10 /clone_end=3' /gb=EC926904

Domain Architecture

F-box PF00646 4870547
DomainStartEndBit scoreE-value
F-box146129.51.4e-05
JmjC24836155.52e-13

Sequences