Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4871762

Identification

Species:
Sorghum bicolor
Gene model
4871762
Description
estExt_Genewise1Plus.C_chr_110587
Family
bHLH
3D structure (top 5)
2VT8 1NKP 1AM9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os03g12940.1 Score: 1
LOC_Os03g12940.2 Score: 1

Expression data

Expressed Sequence Tags

Mtr.16219
EST506448 KV3 Medicago truncatula cDNA clone pKV3-38O16 5' end, mRNA sequence /clone=pKV3-38O16 /clone_end=5' /gb=BG644829
Os.24540
Oryza sativa (japonica cultivar-group) Os03g0728900 (Os03g0728900) mRNA, complete cds /cds=p(1,984) /gb=NM_001057685
Os.52614
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107O02, full insert sequence /gb=CT829433
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.60678
Oryza sativa (japonica cultivar-group) Os08g0487700 (Os08g0487700) mRNA, complete cds /cds=p(1,1098) /gb=NM_001068637
Os.61709
Oryza sativa Japonica Group cDNA, clone: J075103H14, full insert sequence /gb=AK242003
Pth.15516
Populus trichocarpa clone WS01214_F06 unknown mRNA /cds=p(18,1064) /gb=EF146811

Domain Architecture

F-box PF00646 4871762
DomainStartEndBit scoreE-value
F-box33438135.81.7e-07
HLH63468439.11.8e-08

Sequences