Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 487281

Identification

Species:
Arabidopsis lyrata
Gene model
487281
Description
fgenesh2_kg.6__415__AT5G04940.2
Family
SET
3D structure (top 5)
2R3A 1ML9 3F9X 2RFI 1MVH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Carica papaya

evm.TU.supercontig_33.185 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g38900.1 Score: 1

Populus trichocarpa

590678 Score: 1

Sorghum bicolor

4873608 Score: 1

Vitis vinifera

GSVIVP00033960001 Score: 1

Expression data

Expressed Sequence Tags

At.11687
Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) (SUVH3) mRNA, complete cds /cds=p(212,2221) /gb=NM_105968
At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Mtr.13736
EST648070 KV3 Medicago truncatula cDNA clone KV3-49K23, mRNA sequence /clone=KV3-49K23 /gb=CB891101
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

YDG_SRA PF02182 487281
DomainStartEndBit scoreE-value
YDG_SRA195349330.72.8e-96
Pre-SET376475152.11.7e-42
SET477633181.22.9e-51

Sequences