Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4873608

Identification

Species:
Sorghum bicolor
Gene model
4873608
Description
estExt_Genewise1Plus.C_chr_21376
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487281 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Carica papaya

evm.TU.supercontig_33.185 Score: 1

Populus trichocarpa

758229 Score: 1

Vitis vinifera

GSVIVP00033960001 Score: 1

Expression data

Expressed Sequence Tags

At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Hv.11852
HVSMEi0002N21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0002N21f, mRNA sequence /clone=HVSMEi0002N21f /gb=BG365483
Hv.2567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf52h10, mRNA sequence /gb=AK249824
Os.11922
Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence /cds=p(280,2298) /gb=AK069035
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

YDG_SRA PF02182 4873608
DomainStartEndBit scoreE-value
YDG_SRA197347326.55.4e-95
Pre-SET374474153.46.9e-43
SET476629189.21.1e-53

Sequences