Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4874383

Identification

Species:
Sorghum bicolor
Gene model
4874383
Description
estExt_Genewise1Plus.C_chr_26815
Family
SET
3D structure (top 5)
2R3A 1ML9 3F9X 2RFI 1MVH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

902613 Score: 1

Arabidopsis thaliana

AT2G35160.1 Score: 1

Chlamydomonas reinhardtii

6823 Score: 1

Populus trichocarpa

264791 Score: 1

Vitis vinifera

GSVIVP00013493001 Score: 1

Zea mays

GRMZM2G001103_P02 Score: 1
GRMZM2G124729_P02 Score: 1
GRMZM2G001103_P01 Score: 0.909
GRMZM2G124729_P01 Score: 0.909

Expression data

Expressed Sequence Tags

At.12724
Arabidopsis thaliana putative SET-domain protein (At2g35160; T4C15.17) mRNA, complete cds /cds=p(198,2582) /gb=AY062735
At.28511
Arabidopsis thaliana putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds /cds=p(113,2485) /gb=AY065374
Hv.21907
HV03O17r HV Hordeum vulgare subsp. vulgare cDNA clone HV03O17 5-PRIME, mRNA sequence /clone=HV03O17 /clone_end=5' /gb=BQ471934
Os.52449
Oryza sativa Japonica Group cDNA clone:J013096C06, full insert sequence /gb=AK067187
Os.52835
Oryza sativa Japonica Group cDNA clone:J023022E24, full insert sequence /cds=p(94,2877) /gb=AK069520
Os.80559
Oryza sativa (japonica cultivar-group) Os08g0400200 (Os08g0400200) mRNA, complete cds /cds=p(1,3879) /gb=NM_001068288

Domain Architecture

YDG_SRA PF02182 4874383
DomainStartEndBit scoreE-value
YDG_SRA101259250.83.4e-72
Pre-SET283380124.24.2e-34
SET382536165.71.4e-46

Sequences