Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4879172

Identification

Species:
Sorghum bicolor
Gene model
4879172
Description
estExt_Genewise1Plus.C_chr_37370
Family
C3H
3D structure (top 5)
1M9O 2E5S 2RPP 2CQE 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478627 Score: 1

Arabidopsis thaliana

AT3G12680.1 Score: 1

Carica papaya

evm.TU.supercontig_118.23 Score: 1

Chlamydomonas reinhardtii

421287 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g42970.2 Score: 1
LOC_Os01g42970.1 Score: 0.992

Physcomitrella patens

131143 Score: 1

Populus trichocarpa

659387 Score: 1

Vitis vinifera

GSVIVP00002135001 Score: 1

Zea mays

GRMZM2G093281_P02 Score: 1
GRMZM2G122777_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.4165
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence /gb=AK251631
Os.1486
Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence /cds=p(96,1481) /gb=AK112116
Ptp.4402
T010H11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU830627
Sbi.5891
OX1_60_F11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_60_F11_A002 5', mRNA sequence /clone=OX1_60_F11_A002 /clone_end=5' /gb=CN137947 /gi=45971995

Domain Architecture

zf-CCCH PF00642 4879172
DomainStartEndBit scoreE-value
zf-CCCH11815.90.012
zf-CCCH4267277.9e-05
zf-CCCH8210840.56.6e-09
zf-CCCH16318947.94.1e-11
zf-CCCH24326941.33.9e-09
zf-CCCH29432039.91e-08

Sequences