Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 488102

Identification

Species:
Arabidopsis lyrata
Gene model
488102
Description
fgenesh2_kg.6__1236__AT5G12850.1
Family
C3H
3D structure (top 5)
1OY3 2FO1 3D9H 1YCS 2AJA
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G12850.1 Score: 1

Carica papaya

evm.TU.supercontig_92.23 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g49170.1 Score: 1
LOC_Os03g49170.3 Score: 0.963

Populus trichocarpa

560536 Score: 1

Sorghum bicolor

4868336 Score: 1

Selaginella moellendorffii

62212 Score: 1

Vitis vinifera

GSVIVP00028802001 Score: 1

Zea mays

GRMZM2G024061_P01 Score: 1
GRMZM2G001279_P01 Score: 0.946

Expression data

Expressed Sequence Tags

At.5281
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12850) mRNA, complete cds /cds=p(261,2381) /gb=NM_121288
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Mtr.4296
EST510150 HOGA Medicago truncatula cDNA clone pHOGA-23E11 5' end, mRNA sequence /clone=pHOGA-23E11 /clone_end=5' /gb=BG648531
Pba.2984
WS01121.BR_A14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_A14 5', mRNA sequence /clone=WS01121_A14 /clone_end=5' /gb=DT495629
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477

Domain Architecture

Ank PF00023 488102
DomainStartEndBit scoreE-value
Ank8311621.10.0047
Ank11815335.32.5e-07
zf-CCCH29832322.70.0015

Sequences