Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4884239

Identification

Species:
Sorghum bicolor
Gene model
4884239
Description
estExt_Genewise1Plus.C_chr_47956
Family
SET
3D structure (top 5)
2R3A 2RFI 1ML9 3H6L 2W5Y
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481235 Score: 1

Arabidopsis thaliana

AT2G23740.1 Score: 1

Carica papaya

evm.TU.supercontig_15.86 Score: 1

Physcomitrella patens

186998 Score: 1

Populus trichocarpa

218972 Score: 1

Vitis vinifera

GSVIVP00025025001 Score: 1

Zea mays

GRMZM2G172427_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.21694
AU252288 salt-stressed barley root cDNA Hordeum vulgare subsp. vulgare cDNA clone BR-S25 similar to putative SET-domain transcription regulator, mRNA sequence /clone=BR-S25 /gb=AU252288
Hv.30036
HVSMEi0020G03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0020G03f, mRNA sequence /clone=HVSMEi0020G03f /gb=BG368720
Os.47321
Oryza sativa Japonica Group cDNA clone:002-150-E07, full insert sequence /gb=AK108743
Sbi.12353
PI1_51_H09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE596060

Domain Architecture

Pre-SET PF05033 4884239
DomainStartEndBit scoreE-value
Pre-SET8931025409.3e-09
SET102711731521.8e-42

Sequences