Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 488510

Identification

Species:
Arabidopsis lyrata
Gene model
488510
Description
fgenesh2_kg.6__1644__AT5G16540.1
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2RHK 2RPP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G16540.1 Score: 1

Selaginella moellendorffii

45667 Score: 1

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102

Domain Architecture

zf-CCCH PF00642 488510
DomainStartEndBit scoreE-value
zf-CCCH113727.26.8e-05
zf-CCCH5682422.3e-09
zf-CCCH10212843.48.7e-10
zf-CCCH21323944.73.6e-10
zf-CCCH25928545.12.7e-10

Sequences