Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4885362

Identification

Species:
Sorghum bicolor
Gene model
4885362
Description
estExt_Genewise1Plus.C_chr_49649
Family
Jumonji

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

471347 Score: 1
875696 Score: 1

Sorghum bicolor

4885362 Score: 1
5048555 Score: 1

Arabidopsis thaliana

AT4G00990.1 Score: 1

Chlorella sp. NC64A

139911 Score: 1

Carica papaya

evm.TU.supercontig_3.92 Score: 1

Chlamydomonas reinhardtii

142903 Score: 1

Coccomyxa sp. C-169

77471 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g58210.2 Score: 1
LOC_Os02g58210.1 Score: 0.992

Physcomitrella patens

154856 Score: 1

Populus trichocarpa

207883 Score: 1

Vitis vinifera

GSVIVP00031870001 Score: 1

Zea mays

GRMZM2G080760_P02 Score: 1

Expression data

Expressed Sequence Tags

At.18334
Arabidopsis thaliana IBM1 (INCREASE IN BONSAI METHYLATION 1); histone demethylase(H3-K9 specific) / transcription factor (IBM1) mRNA, complete cds /cds=p(1,3084) /gb=NM_111640
At.36279
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT1G62310) mRNA, complete cds /cds=p(1,2652) /gb=NM_104911
At.42102
Arabidopsis thaliana transcription factor (AT1G11950) mRNA, complete cds /cds=p(1,2628) /gb=NM_101067
Hv.4909
BJ484812 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56d17 3', mRNA sequence /clone=bah56d17 /clone_end=3' /gb=BJ484812
Mtr.22381
METAL93TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475949
Os.18195
Oryza sativa Japonica Group cDNA clone:J033020J08, full insert sequence /gb=AK073195
Os.50915
Oryza sativa Japonica Group cDNA clone:001-028-A06, full insert sequence /cds=p(115,1254) /gb=AK059445
Os.6505
Oryza sativa Japonica Group cDNA clone:001-023-A12, full insert sequence /gb=AK059145
Os.82084
T9 Water-deficit induced fragments in rice seminal root tips Oryza sativa cDNA clone T9, mRNA sequence /clone=T9 /gb=CB238462
Ppa.19248
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_118936) mRNA, partial cds /cds=p(1,1998) /gb=XM_001757080
Ppa.20723
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_154856) mRNA, complete cds /cds=p(1,2082) /gb=XM_001785065
Ppa.6739
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_200454) mRNA, complete cds /cds=p(181,2250) /gb=XM_001784865
Vvi.11982
CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154
Vvi.4830
CAB2SG0004_IaR_D10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IaR_D10 3', mRNA sequence /clone=CAB2SG0004_IaR_D10 /clone_end=3' /gb=CB348379

Domain Architecture

AT_hook PF02178 4885362
DomainStartEndBit scoreE-value
AT_hook183019.50.011
JmjC722853409.7e-09

Sequences