Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 489269

Identification

Species:
Arabidopsis lyrata
Gene model
489269
Description
fgenesh2_kg.6__2403__AT5G24120.1
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 1L9Z 2A6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G24120.1 Score: 1

Carica papaya

evm.TU.supercontig_3.55 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g50930.1 Score: 1

Physcomitrella patens

230140 Score: 1

Populus trichocarpa

591382 Score: 1

Sorghum bicolor

5010228 Score: 1

Selaginella moellendorffii

53596 Score: 1

Vitis vinifera

GSVIVP00006496001 Score: 1

Zea mays

GRMZM2G077436_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5425
Arabidopsis thaliana SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (SIGE) mRNA, complete cds /cds=p(108,1661) /gb=NM_122317
Hv.13889
BJ484953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56o16 3', mRNA sequence /clone=bah56o16 /clone_end=3' /gb=BJ484953
Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697

Domain Architecture

Sigma70_r2 PF04542 489269
DomainStartEndBit scoreE-value
Sigma70_r228335651.63e-12
Sigma70_r335944066.31.1e-16
Sigma70_r445250579.11.5e-20

Sequences