Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4898750

Identification

Species:
Sorghum bicolor
Gene model
4898750
Description
estExt_Genewise1Plus.C_chr_108272
Family
bHLH
3D structure (top 5)
1HLO 1NKP 1AM9 1NLW 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496795 Score: 1

Arabidopsis thaliana

AT5G65640.1 Score: 1

Carica papaya

evm.TU.supercontig_129.19 Score: 1

Populus trichocarpa

816406 Score: 1

Zea mays

GRMZM2G128807_P01 Score: 1

Expression data

Expressed Sequence Tags

At.28897
Arabidopsis thaliana BHLH093 (BETA HLH PROTEIN 93); DNA binding / transcription factor (BHLH093) mRNA, complete cds /cds=p(83,1138) /gb=NM_125962
At.32362
Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds /cds=p(1,948) /gb=AF488594
Hv.11837
HVSMEg0001D17f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0001D17f, mRNA sequence /clone=HVSMEg0001D17f /gb=BG342910
Hv.30941
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174i06, mRNA sequence /gb=AK252912
Mtr.1394
EST590599 KV2 Medicago truncatula cDNA clone pKV2-53B14, mRNA sequence /clone=pKV2-53B14 /gb=BM780023
Os.11409
Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence /cds=p(141,782) /gb=AK063523
Os.46563
Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence /cds=p(21,1163) /gb=AK063669
Os.5860
Oryza sativa Japonica Group cDNA clone:J033145C17, full insert sequence /gb=AK103779
Pth.13125
Populus trichocarpa clone WS01117_P21 unknown mRNA /cds=p(36,1079) /gb=EF144766
Vvi.5703
WIN082.C21_D19 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN082_D19 3', mRNA sequence /clone=WIN082_D19 /clone_end=3' /gb=EC959980

Domain Architecture

HLH PF00010 4898750
DomainStartEndBit scoreE-value
HLH68115377.8e-08

Sequences