Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 490793

Identification

Species:
Arabidopsis lyrata
Gene model
490793
Description
fgenesh2_kg.7__226__AT4G40060.1
Family
HB
3D structure (top 5)
1ZQ3 1B72 1NK2 2E1O 2R5Y
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G40060.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g29460.1 Score: 1

Sorghum bicolor

147812 Score: 1

Zea mays

GRMZM2G056600_P01 Score: 1
GRMZM2G068318_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20863
Arabidopsis thaliana ATHB-16/ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); transcription activator/ transcription factor (ATHB-16/ATHB16) mRNA, complete cds /cds=p(311,1195) /gb=NM_120171
At.25257
Arabidopsis thaliana ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6); transcription factor (ATHB6) mRNA, complete cds /cds=p(219,1154) /gb=NM_127808
Pba.9592
WS02549.C21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O11 3', mRNA sequence /clone=WS02549_O11 /clone_end=3' /gb=DT492190
Pth.12047
M112B12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M112B12 5', mRNA sequence /clone=M112B12 /clone_end=5' /gb=DN494600

Domain Architecture

Homeobox PF00046 490793
DomainStartEndBit scoreE-value
Homeobox59113714.4e-18
HALZ11415868.13.4e-17

Sequences