Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 490960

Identification

Species:
Arabidopsis lyrata
Gene model
490960
Description
fgenesh2_kg.7__393__AT4G36740.1
Family
HB
3D structure (top 5)
1ZQ3 1B72 1B8I 2CRA 1NK2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G36740.1 Score: 1

Populus trichocarpa

827106 Score: 1

Vitis vinifera

GSVIVP00024986001 Score: 1

Zea mays

GRMZM2G062244_P01 Score: 1

Expression data

Expressed Sequence Tags

At.50404
51-L021586-065-006-B12S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 006-B12, mRNA sequence /clone=006-B12 /gb=DR750552
At.51263
Arabidopsis thaliana homeodomain protein (HB53) mRNA, complete cds /cds=p(87,773) /gb=AY683477
At.52810
40-L021586-065-006-C05S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 006-C05, mRNA sequence /clone=006-C05 /gb=DR750747
Mtr.15817
NF084C10LF1F1082 Developing leaf Medicago truncatula cDNA clone NF084C10LF 5', mRNA sequence /clone=NF084C10LF /clone_end=5' /gb=BG452174
Pba.10478
WS02544.B21_L13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_L13 3', mRNA sequence /clone=WS02544_L13 /clone_end=3' /gb=DT490350
Pth.10478
WS02544.B21_L13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_L13 3', mRNA sequence /clone=WS02544_L13 /clone_end=3' /gb=DT490350
Vvi.23029
WIN1149.C21_O12 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1149_O12 3', mRNA sequence /clone=WIN1149_O12 /clone_end=3' /gb=EC993944

Domain Architecture

Homeobox PF00046 490960
DomainStartEndBit scoreE-value
Homeobox5611075.12.6e-19

Sequences