Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 491032

Identification

Species:
Arabidopsis lyrata
Gene model
491032
Description
fgenesh2_kg.7__465__AT4G36020.1
Family
CSD
3D structure (top 5)
1MJC 1H95 3CAM 1C9O 2K5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G36020.1 Score: 1

Arabidopsis lyrata

480687 Score: 1
491032 Score: 1

Carica papaya

evm.TU.supercontig_6.256 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02870.1 Score: 1

Physcomitrella patens

47533 Score: 1

Populus trichocarpa

412941 Score: 1

Sorghum bicolor

5003468 Score: 1

Selaginella moellendorffii

186937 Score: 1

Vitis vinifera

GSVIVP00036773001 Score: 1

Expression data

Expressed Sequence Tags

At.19464
Arabidopsis thaliana cold-shock DNA-binding family protein (AT2G17870) mRNA, complete cds /cds=p(50,955) /gb=NM_127341
At.23073
Arabidopsis thaliana mRNA for glycine-rich protein, complete cds, clone: RAFL07-95-D17 /cds=p(60,959) /gb=AK226815

Domain Architecture

CSD PF00313 491032
DomainStartEndBit scoreE-value
CSD1077128.32.5e-35
zf-CCHC124141361.5e-07
zf-CCHC15817532.32e-06
zf-CCHC19020729.56.7e-06
zf-CCHC21323031.82.7e-06
zf-CCHC24025733.87.1e-07

Sequences