Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 491407

Identification

Species:
Arabidopsis lyrata
Gene model
491407
Description
fgenesh2_kg.7__840__AT4G32890.1
Family
C2C2-GATA
3D structure (top 5)
2VUT 4GAT 1GNF 2KAE 3DFX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G32890.1 Score: 1

Carica papaya

evm.TU.supercontig_78.7 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g54210.1 Score: 1

Physcomitrella patens

34911 Score: 1

Populus trichocarpa

802380 Score: 1

Sorghum bicolor

4975775 Score: 1

Vitis vinifera

GSVIVP00032414001 Score: 1

Zea mays

GRMZM2G044576_P01 Score: 1

Expression data

Expressed Sequence Tags

At.2468
Arabidopsis thaliana zinc finger (GATA type) family protein (AT4G32890) mRNA, complete cds /cds=p(129,1055) /gb=NM_119442
Pth.16215
V058C03.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V058C03 3', mRNA sequence /clone=V058C03 /clone_end=3' /gb=DN492251
Vvi.23728
WIN0528.C21_J15 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0528_J15 3', mRNA sequence /clone=WIN0528_J15 /clone_end=3' /gb=EC943349

Domain Architecture

GATA PF00320 491407
DomainStartEndBit scoreE-value
GATA20023563.76.9e-16

Sequences