Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 493513

Identification

Species:
Arabidopsis lyrata
Gene model
493513
Description
fgenesh2_kg.7__2946__AT4G13980.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G13980.1 Score: 1

Carica papaya

evm.TU.supercontig_157.43 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g29340.1 Score: 1

Populus trichocarpa

597074 Score: 1

Sorghum bicolor

4756324 Score: 1

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 1

Expression data

Expressed Sequence Tags

At.4244
Arabidopsis thaliana AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5); DNA binding / transcription factor (AT-HSFA5) mRNA, complete cds /cds=p(68,1468) /gb=NM_117472
Hv.18901
HVSMEb0008B10f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0008B10f, mRNA sequence /clone=HVSMEb0008B10f /gb=BF628773
Mtr.12448
MTYDR37TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV259038
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536

Domain Architecture

HSF_DNA-bind PF00447 493513
DomainStartEndBit scoreE-value
HSF_DNA-bind21187195.11.9e-55

Sequences