Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 493837

Identification

Species:
Arabidopsis lyrata
Gene model
493837
Description
fgenesh2_kg.7__3270__AT5G41410.1
Family
HB
3D structure (top 5)
2DMN 1PUF 1B72 1DU6 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G41410.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g01934.1 Score: 1

Sorghum bicolor

4769352 Score: 1

Zea mays

GRMZM2G013617_P01 Score: 1
GRMZM2G161961_P01 Score: 1

Expression data

Expressed Sequence Tags

At.14305
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX820985
At.24568
Arabidopsis thaliana BEL1 (BELL 1); DNA binding / transcription factor (BEL1) mRNA, complete cds /cds=p(381,2216) /gb=NM_123506
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.22349
META209TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474128
Mtr.7013
AC4843 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618467
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 493837
DomainStartEndBit scoreE-value
POX187333236.37.6e-68
Homeobox3884467.20.0024

Sequences