Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 493888

Identification

Species:
Arabidopsis lyrata
Gene model
493888
Description
fgenesh2_kg.7__3321__AT5G40880.1
Family
C3H
3D structure (top 5)
1R5M 3DM0 2OAJ 1P22 2HES
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G40880.1 Score: 1

Expression data

Expressed Sequence Tags

At.30265
Arabidopsis thaliana WD-40 repeat family protein / zfwd3 protein (ZFWD3) (AT5G40880) mRNA, complete cds /cds=p(587,2005) /gb=NM_123453
At.64278
Arabidopsis thaliana WD-40 repeat family protein / zfwd4 protein (ZFWD4) (AT5G49200) mRNA, complete cds /cds=p(1,1260) /gb=NM_124297
Os.23123
Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence /cds=p(295,1320) /gb=AK102324
Ptp.815
T003G04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU830086
Vvi.1545
EST 3442 Veraison Grape berries Lambda Zap II Library Vitis vinifera cDNA clone TT273H07 3', mRNA sequence /clone=TT273H07 /clone_end=3' /gb=BQ794504

Domain Architecture

zf-CCCH PF00642 493888
DomainStartEndBit scoreE-value
zf-CCCH140165353e-07
WD4017120925.90.00017
WD4029533229.51.3e-05
WD40336372322.4e-06

Sequences