Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 494245

Identification

Species:
Arabidopsis lyrata
Gene model
494245
Description
fgenesh2_kg.8__61__AT5G47370.1
Family
HB
3D structure (top 5)
2HDD 1B8I 2DA3 2CRA 3D1N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G47370.1 Score: 1

Carica papaya

evm.TU.supercontig_89.58 Score: 1

Populus trichocarpa

589889 Score: 1
799722 Score: 1

Vitis vinifera

GSVIVP00012051001 Score: 1
GSVIVP00012221001 Score: 1

Expression data

Expressed Sequence Tags

At.19738
Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds /cds=p(148,996) /gb=U09332
At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
At.24419
Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds /cds=p(202,1056) /gb=M90394
At.25127
Arabidopsis thaliana HAT2; transcription factor (HAT2) mRNA, complete cds /cds=p(263,1114) /gb=NM_124108
At.44957
20-L022147-065-007-D03-SeLA MPIZ-ADIS-065f Arabidopsis thaliana cDNA clone 007-D03, mRNA sequence /clone=007-D03 /gb=DR751659
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.23861
Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence /cds=p(140,883) /gb=AK122006
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Ppa.26054
DC945664 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs8n05 3', mRNA sequence /clone=ppgs8n05 /clone_end=3' /gb=DC945664
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649

Domain Architecture

HD-ZIP_N PF04618 494245
DomainStartEndBit scoreE-value
HD-ZIP_N192150.93.8e-42
Homeobox12918362.61.5e-15
HALZ18422877.35.6e-20

Sequences