Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 494576

Identification

Species:
Arabidopsis lyrata
Gene model
494576
Description
fgenesh2_kg.8__392__AT5G44180.1
Family
HB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G44180.1 Score: 1

Coccomyxa sp. C-169

82237 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g48820.1 Score: 1

Physcomitrella patens

67495 Score: 1

Populus trichocarpa

216338 Score: 1

Sorghum bicolor

5036401 Score: 1

Vitis vinifera

GSVIVP00018645001 Score: 1

Zea mays

GRMZM2G122750_P01 Score: 1
GRMZM2G150413_P01 Score: 1

Expression data

Expressed Sequence Tags

At.24988
Arabidopsis thaliana homeobox transcription factor, putative (AT5G44180) mRNA, complete cds /cds=p(1,5085) /gb=NM_123785
Hv.16581
BJ473219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal41c06 5', mRNA sequence /clone=baal41c06 /clone_end=5' /gb=BJ473219
Os.81796
SSHD126 Rice callus and differential tissue SSH library Oryza sativa cDNA, mRNA sequence /gb=CA923264

Domain Architecture

Homeobox PF00046 494576
DomainStartEndBit scoreE-value
Homeobox167274.92.9e-19
DDT51557491.72.6e-24

Sequences