Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 494600

Identification

Species:
Arabidopsis lyrata
Gene model
494600
Description
fgenesh2_kg.8__416__AT5G43990.4
Family
SET
3D structure (top 5)
2R3A 3F9X 2RFI 1ML9 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G43990.2 Score: 1.011
AT5G43990.1 Score: 1
AT5G43990.3 Score: 1
AT5G43990.4 Score: 1

Carica papaya

evm.TU.supercontig_87.14 Score: 1

Populus trichocarpa

243333 Score: 1

Vitis vinifera

GSVIVP00028515001 Score: 1

Expression data

Expressed Sequence Tags

At.10585
Arabidopsis thaliana SUVR1 (Arabidopsis homolog of SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (SUVR1) mRNA, complete cds /cds=p(102,2306) /gb=NM_100286
At.26569
Arabidopsis thaliana mRNA for SET domain protein SUVR2, complete cds, clone: RAFL26-05-B10 /cds=p(244,2397) /gb=AK230468
At.27206
Arabidopsis thaliana Su(VAR)3-9-related protein 4 (SUVR4) mRNA, complete cds /cds=p(216,1682) /gb=AF408062
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

WIYLD PF10440 494600
DomainStartEndBit scoreE-value
WIYLD161116.59.1e-32
Pre-SET39053725.62.4e-06
SET5396801538.9e-43

Sequences