Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4964952

Identification

Species:
Sorghum bicolor
Gene model
4964952
Description
fgenesh1_pg.C_chr_1001554
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1AN4
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

494687 Score: 1
855794 Score: 1

Arabidopsis thaliana

AT4G09180.1 Score: 1

Carica papaya

evm.TU.supercontig_106.55 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g42100.1 Score: 1

Expression data

Expressed Sequence Tags

At.40499
Arabidopsis thaliana basic helix-loop-helix protein / bHLH protein (AT2G14760) mRNA, complete cds /cds=p(1,987) /gb=NM_127040
Hv.28839
HDP01K19T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP01K19, mRNA sequence /clone=HDP01K19 /gb=EX578118
Os.78914
Oryza sativa (japonica cultivar-group) Os07g0588400 (Os07g0588400) mRNA, complete cds /cds=p(1,840) /gb=NM_001066677
Os.79759
Oryza sativa (japonica cultivar-group) Os03g0617800 (Os03g0617800) mRNA, complete cds /cds=p(1,933) /gb=NM_001057202

Domain Architecture

Protamine_P1 PF00260 4964952
DomainStartEndBit scoreE-value
Protamine_P12102639.83.4
HLH21726636.61e-07

Sequences