Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4969815

Identification

Species:
Sorghum bicolor
Gene model
4969815
Description
fgenesh1_pg.C_chr_2001131
Family
BBR/BPC

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484115 Score: 1

Arabidopsis thaliana

AT2G01930.1 Score: 1
AT2G01930.2 Score: 1

Sorghum bicolor

4969815 Score: 1
5050836 Score: 1

Carica papaya

evm.TU.supercontig_2.113 Score: 1

Sorghum bicolor

4969815 Score: 1
5050836 Score: 1

Populus trichocarpa

580640 Score: 1
597452 Score: 1
726757 Score: 1

Vitis vinifera

GSVIVP00017893001 Score: 1

Expression data

Expressed Sequence Tags

At.15024
Arabidopsis thaliana BPC2 (BASIC PENTACYSTEINE 2) (BPC2) mRNA, complete cds /cds=p(499,1338) /gb=NM_202099
At.28559
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX821002
At.35567
Arabidopsis thaliana ATBPC3/BBR/BPC3/BPC3 (BASIC PENTACYSTEINE 3); DNA binding / transcription factor (ATBPC3/BBR/BPC3/BPC3) mRNA, complete cds /cds=p(56,868) /gb=NM_105482
Hv.28602
HDP38G13w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP38G13, mRNA sequence /clone=HDP38G13 /gb=EX600166
Os.20496
Oryza sativa Japonica Group cDNA clone:001-118-H02, full insert sequence /gb=AK063643
Os.23269
Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds /cds=p(253,1284) /gb=AY570521
Os.89552
Oryza sativa (japonica cultivar-group) barley B recombinant like-protein B mRNA, complete cds /cds=p(62,1087) /gb=AY569037
Pba.10464
WS02553.C21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_L06 3', mRNA sequence /clone=WS02553_L06 /clone_end=3' /gb=DT493203
Pba.1761
WS0251.B21_K21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0251_K21 3', mRNA sequence /clone=WS0251_K21 /clone_end=3' /gb=CV240544
Pth.16344
Populus trichocarpa clone WS01116_B19 unknown mRNA /cds=p(115,954) /gb=EF144625
Pth.1761
WS02553.C21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_L06 3', mRNA sequence /clone=WS02553_L06 /clone_end=3' /gb=DT493203
Vvi.3378
Vitis vinifera GAGA-binding transcriptional activator BBR/BPC1-like mRNA, complete cds /cds=p(43,924) /gb=EU597743

Domain Architecture

DUF1004 PF06217 4969815
DomainStartEndBit scoreE-value
DUF10042224288.71.3e-83

Sequences