Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4970985

Identification

Species:
Sorghum bicolor
Gene model
4970985
Description
fgenesh1_pg.C_chr_2002301
Family
C2H2
3D structure (top 5)
2JP9 2CSH 2DLQ 1TF6 2I13
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g27650.2 Score: 1

Physcomitrella patens

221736 Score: 1

Sorghum bicolor

4970985 Score: 1
4987506 Score: 1

Vitis vinifera

GSVIVP00017892001 Score: 1
GSVIVP00030657001 Score: 1

Zea mays

GRMZM2G141031_P01 Score: 1

Expression data

Expressed Sequence Tags

At.42019
Arabidopsis thaliana ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5) (ATIDD15/SGR5) mRNA, complete cds /cds=p(378,1718) /gb=NM_001084399
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Hv.20295
BNEL107d4 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL107d4 5' similar to putative zinc finger protein, mRNA sequence /clone=BNEL107d4 /clone_end=5' /gb=CV054158
Mtr.17317
NF078A11IN1F1085 Insect herbivory Medicago truncatula cDNA clone NF078A11IN 5', mRNA sequence /clone=NF078A11IN /clone_end=5' /gb=BI265111
Os.17568
Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence /gb=AK120603
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.50005
Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence /gb=AK119595
Os.52565
Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence /gb=AK120723
Os.54518
Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence /gb=AK289209
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.5733
Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence /gb=AK288964
Os.80098
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence /gb=CT837698
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Pth.2108
Populus trichocarpa clone WS01227_A11 unknown mRNA /cds=p(18,1286) /gb=EF147067
Pth.559
Populus trichocarpa clone WS0122_O19 unknown mRNA /cds=p(1043,1366) /gb=EF147359
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 4970985
DomainStartEndBit scoreE-value
zf-C2H2234529.21.7e-05
zf-C2H210112319.20.018

Sequences