Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4971348

Identification

Species:
Sorghum bicolor
Gene model
4971348
Description
fgenesh1_pg.C_chr_2002664
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G50915.1 Score: 1
AT5G50915.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g33580.1 Score: 1
LOC_Os09g33580.2 Score: 1

Sorghum bicolor

4971348 Score: 1
4987865 Score: 1

Populus trichocarpa

575437 Score: 1
773249 Score: 1

Vitis vinifera

GSVIVP00017695001 Score: 1

Zea mays

GRMZM2G178182_P02 Score: 1

Expression data

Expressed Sequence Tags

At.23601
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT5G50915) mRNA, complete cds /cds=p(64,924) /gb=NM_180832
At.40357
Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL25-20-F07 /cds=p(183,1553) /gb=AK176663
Hv.13693
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence /gb=AK250810
Hv.28428
HDP06B05w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP06B05, mRNA sequence /clone=HDP06B05 /gb=EX577146
Os.23082
Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence /cds=p(49,1068) /gb=AK065864
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.88028
Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence /cds=p(129,977) /gb=AK066188
Os.89290
CT860519 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCSN074O02, mRNA sequence /clone=OSIGCSN074O02 /gb=CT860519

Domain Architecture

HLH PF00010 4971348
DomainStartEndBit scoreE-value
HLH11616635.52.1e-07

Sequences