Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4972897

Identification

Species:
Sorghum bicolor
Gene model
4972897
Description
fgenesh1_pg.C_chr_3000012
Family
C2H2
3D structure (top 5)
2CSH 2DLQ 2I13 2JP9 2RPC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_45.58 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g14010.1 Score: 1

Populus trichocarpa

594620 Score: 1

Vitis vinifera

GSVIVP00018650001 Score: 1

Zea mays

GRMZM2G151309_P01 Score: 1

Expression data

Expressed Sequence Tags

At.13356
Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds /cds=p(67,1875) /gb=AY056174
At.13357
Arabidopsis thaliana ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4) (ATIDD4) mRNA, complete cds /cds=p(360,1679) /gb=NM_001124782
At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.54100
Arabidopsis thaliana ATIDD12 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 12); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD12) mRNA, complete cds /cds=p(1,1209) /gb=NM_116501
Mtr.9921
MTYCV25TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256295
Os.17568
Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence /gb=AK120603
Os.34720
Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence /cds=p(231,1661) /gb=AK070390
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.52565
Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence /gb=AK120723
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 4972897
DomainStartEndBit scoreE-value
zf-C2H2224428.23.3e-05
zf-C2H29812022.80.0014

Sequences