Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4975380

Identification

Species:
Sorghum bicolor
Gene model
4975380
Description
fgenesh1_pg.C_chr_3002495
Family
HB
3D structure (top 5)
2ECB 2DA5 2CRA 2DJN 2R5Y
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

4975380 Score: 1
5036401 Score: 0.929

Expression data

Expressed Sequence Tags

At.24988
Arabidopsis thaliana homeobox transcription factor, putative (AT5G44180) mRNA, complete cds /cds=p(1,5085) /gb=NM_123785
At.27788
Arabidopsis thaliana HB-1 (homeobox-1); transcription factor (HB-1) mRNA, complete cds /cds=p(135,5252) /gb=NM_102610
Hv.16581
BJ473219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal41c06 5', mRNA sequence /clone=baal41c06 /clone_end=5' /gb=BJ473219
Hv.757
HVSMEc0005I04f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0005I04f, mRNA sequence /clone=HVSMEc0005I04f /gb=BF618379
Os.6086
Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence /gb=AK121237
Os.81796
SSHD126 Rice callus and differential tissue SSH library Oryza sativa cDNA, mRNA sequence /gb=CA923264
Ppa.25142
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_67495) mRNA, complete cds /cds=p(1,6759) /gb=XM_001754825

Domain Architecture

Homeobox PF00046 4975380
DomainStartEndBit scoreE-value
Homeobox5511171.82.6e-18
DDT63269179.51.2e-20

Sequences