Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4983732

Identification

Species:
Sorghum bicolor
Gene model
4983732
Description
fgenesh1_pg.C_chr_6000619
Family
CAMTA
3D structure (top 5)
1YCS 2F8Y 2VGE 1DCQ 1YYH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

315745 Score: 1

Arabidopsis thaliana

AT1G67310.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g31900.1 Score: 1

Populus trichocarpa

554769 Score: 1

Vitis vinifera

GSVIVP00002786001 Score: 1

Zea mays

GRMZM2G143205_P01 Score: 1

Expression data

Expressed Sequence Tags

At.49316
Arabidopsis thaliana calmodulin binding / transcription regulator (AT1G67310) mRNA, complete cds /cds=p(1,3051) /gb=NM_105399
Hv.15413
HO28H07S HO Hordeum vulgare cDNA clone HO28H07 5-PRIME, mRNA sequence /clone=HO28H07 /clone_end=5' /gb=DN180048
Os.11702
Oryza sativa (japonica cultivar-group) Os04g0388500 (Os04g0388500) mRNA, complete cds /cds=p(306,3317) /gb=NM_001059165
Os.18959
Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence /cds=p(189,2825) /gb=AK068932
Os.97411
OSJNEf08I05.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA clone OSJNEf08I05 5', mRNA sequence /clone=OSJNEf08I05 /clone_end=5' /gb=CB681818
Pba.7431
WS02531.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_F11 3', mRNA sequence /clone=WS02531_F11 /clone_end=3' /gb=DT486565
Pth.7431
WS02531.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_F11 3', mRNA sequence /clone=WS02531_F11 /clone_end=3' /gb=DT486565
Vvi.3259
VVTOV175 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vitis vinifera cDNA 5', mRNA sequence /clone_end=5' /gb=EY255047

Domain Architecture

CG-1 PF03859 4983732
DomainStartEndBit scoreE-value
CG-129140249.39.3e-72
Ank66369539.51.3e-08
Ank7027390.432
IQ84386320.70.006
IQ86688632.22.1e-06

Sequences

protein sequence
transcript sequence