Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4987506

Identification

Species:
Sorghum bicolor
Gene model
4987506
Description
fgenesh1_pg.C_chr_7001596
Family
C2H2
3D structure (top 5)
2CSH 2DLQ 2I13 1TF6 2RPC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484116 Score: 1

Arabidopsis thaliana

AT2G01940.1 Score: 1
AT2G01940.3 Score: 0.969

Carica papaya

evm.TU.supercontig_7.131 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g36390.1 Score: 1

Populus trichocarpa

569394 Score: 1

Sorghum bicolor

4970985 Score: 1
4987506 Score: 1

Vitis vinifera

GSVIVP00017892001 Score: 1
GSVIVP00030657001 Score: 1

Zea mays

GRMZM2G123094_P02 Score: 1

Expression data

Expressed Sequence Tags

At.42019
Arabidopsis thaliana ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5) (ATIDD15/SGR5) mRNA, complete cds /cds=p(378,1718) /gb=NM_001084399
At.51762
Arabidopsis thaliana ATIDD16 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 16); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD16) mRNA, complete cds /cds=p(1,1089) /gb=NM_102334
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Hv.20295
BNEL107d4 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL107d4 5' similar to putative zinc finger protein, mRNA sequence /clone=BNEL107d4 /clone_end=5' /gb=CV054158
Mtr.17317
NF078A11IN1F1085 Insect herbivory Medicago truncatula cDNA clone NF078A11IN 5', mRNA sequence /clone=NF078A11IN /clone_end=5' /gb=BI265111
Os.17568
Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence /gb=AK120603
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.50005
Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence /gb=AK119595
Os.52565
Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence /gb=AK120723
Os.54518
Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence /gb=AK289209
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.5733
Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence /gb=AK288964
Os.80098
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence /gb=CT837698
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 4987506
DomainStartEndBit scoreE-value
zf-C2H2274929.21.7e-05
zf-C2H210512719.20.018

Sequences