Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 4987865

Identification

Species:
Sorghum bicolor
Gene model
4987865
Description
fgenesh1_pg.C_chr_7001955
Family
bHLH
3D structure (top 5)
1AM9 1HLO 1NKP 1A0A 1MDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_4.108 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g42470.1 Score: 1

Sorghum bicolor

4971348 Score: 1
4987865 Score: 1

Populus trichocarpa

575437 Score: 1
773249 Score: 1

Zea mays

GRMZM2G046493_P03 Score: 1
GRMZM2G181433_P01 Score: 1
GRMZM2G181433_P02 Score: 0.956

Expression data

Expressed Sequence Tags

At.41276
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein (AT1G26260) mRNA, complete cds /cds=p(111,1283) /gb=NM_102390
Hv.13693
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence /gb=AK250810
Hv.28428
HDP06B05w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP06B05, mRNA sequence /clone=HDP06B05 /gb=EX577146
Mtr.14730
EST5311646 GESD Medicago truncatula cDNA clone pGESD4O22 5' end, mRNA sequence /clone=pGESD4O22 /clone_end=5' /gb=BI309896
Os.5763
Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence /cds=p(332,1777) /gb=AK101063
Os.87970
Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence /cds=p(169,960) /gb=AK108605
Os.88028
Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence /cds=p(129,977) /gb=AK066188
Os.89290
CT860519 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCSN074O02, mRNA sequence /clone=OSIGCSN074O02 /gb=CT860519

Domain Architecture

HLH PF00010 4987865
DomainStartEndBit scoreE-value
HLH12917934.73.7e-07

Sequences